Experience

Salarié, Oct 2017 - Aujourd'hui

Study of phenotypical impact of genetic variants that modify RNAs secondary structure in bovine: algorithmic methodology and experimental validation

GABI - INRA Jouy-en-Josas, France
Dominique Rocha https://www6.jouy.inra.fr/gabi_eng/
AMIBIO - INRIA Palaiseau, France
Yann Ponty https://www.inria.fr/en/teams/amibio

Study of phenotypical impact of genetic variants that modify RNAs secondary structure in bovine: algorithmic methodology and experimental validation.

Project: Focused on developing and implementing an algorithm that allows computation of complex RNA structural features and analyze clustering discrepancies between new clustering and functional clustering.

Concepts: grammar theory, lex/yacc, machine learning, dynamic programming

Tools: Python (scikit-learn, pandas, ply), conda, GAP-compiler

Salarié, Jan 2018 - Aujourd'hui

Teaching assistant in Computer Science

École Polytechnique Palaiseau, France
Benjamin Werner https://www.polytechnique.edu/fr/departement-informatique

Teaching assistant in Introduction to algorithms and data structure (Python, in English) and in Introduction to object-oriented programming (Java, in French) in bachelor's degree.

Salarié, Jan 2017 - Jan 2017

Bioinformatician

Laboratoire d'Informatique de Polytechnique (LIX) Palaiseau, France
Yann Ponty https://www.lix.polytechnique.fr/team/2/view
Alain Denise

Project: Focused on improving a database of RNAs of specific interest (frameshift -1).

Concepts: relational algebra

Tools: Python (scikit-learn, psycopg2), PostgreSQL

Stagiaire, Jul 2016 - Aug 2016

Kinetics of RNAs in the context of -1 frameshift

Laboratoire de Recherche en Informatique (LRI) Orsay, France
Alain Denise https://bioinfo.lri.fr/
AMIBIO - INRIA Palaiseau, France
Yann Ponty https://www.inria.fr/en/teams/amibio

Project: retrieving, organizing and selecting RNAs of specific interest (frameshift -1) to create a new database

Concepts: relational algebra, data mining and data selection

Tools: Python (scikit-learn, psycopg2), PostgreSQL

Stagiaire, Mar 2015 - Aug 2015

Non-ambiguous tree alignment for homology and common patterns detection in 3D structure of RNAs

Laboratoire d'Informatique de Polytechnique (LIX) Palaiseau, France
Yann Ponty and Mireille Régnier https://www.inria.fr/en/teams/amibio
Department of Mathematics, Simon Fraser University Vancouver, Canada
Cedric Chauve http://www.sfu.ca/math.html

Project: Exploratory analysis of the distribution of dihedrals angles and interaction types of several RNA functional families, implementation of a dynamic programming algorithm for non-ambiguous tree alignment.

Concepts: dynamic programming, graph theory, data analysis

Tools: Python, C++

Development of an extension to biopython (code available here).
Implementation of a dynamic programming algorithm (code available here).
Exploratory analysis of dihedral angles & interactions types distributions of several RNA families.
Report available here.

Stagiaire, Mar 2013 - Aug 2013

Study of helicoidal DNA parameters impacting DNA compaction

Laboratoire de Pharmacologie et de Biologie Appliquée (LBPA) Cachan, France
Stéphanie Bury-Moné http://lbpa.ens-paris-saclay.fr/version-anglaise/
Brigitte Hartmann

Project: Study of the helicoidal parameters of DNA that have an effect on DNA compaction, statistical analysis based on the TRX scale.

Concepts: statistical analysis, spectral analysis

Tools: Python

Stagiaire, Nov 2012 - Nov 2012

Insight to scientific research

Laboratoire de Pharmacologie et de Biologie Appliquée (LBPA) Cachan, France
Stéphanie Bury-Moné http://lbpa.ens-paris-saclay.fr/version-anglaise/
Brigitte Hartmann

Routine biology experiments (transfections, mutagenesis, cloning, electrophoresis,…)
Development of Python scripts.

Proudly propulsed by Django framework.
Code available Here.